What types of input files are supported?

FASTQ, FASTQ.GZ, FGZ

mRNA-seq

miRNA-seq

ChIP-seq

ATAC-seq

QuantSeq 3' mRNA-Seq FWD or REV

TXT or CSV

mRNA-seq (Processed Counts)

miRNA-seq (Processed Counts)

scRNA-seq Loupe Clustering

Gene Expression nSolver® Normalized Counts

miRNA nSolver® Normalized Counts

RCC	Gene Expression nCounter® RCC miRNA nCounter® RCC PlexSet™ Gene Expression (Limited Beta)

Please see here to learn more about how to upload multiple files for paired-end or multi-lane data

For Gene Expression experiments, FASTQ files and count files are supported. Compressed FASTQs will have faster upload times. Our full list of supported file types include: .FASTQ, .FASTQ.GZ, .CSV, .TXT, and .RCC (NanoString only)