GeoMx

GeoMx Spatial Transcriptomics

Best-in-class GeoMx SolutionFrom DCC files to pathway enrichment and beyond
Single Cell

Single Cell Gene Expression

From FASTQ to cell clusters and beyond
RNA-seq

Gene Expression: RNA-seq

Complete guide to RNA-seq data analysis
NanoString

NanoString: Gene & miRNA Expression

Visualize and collaborate on NanoString nCounter datasets
Small RNA-seq

Gene Regulation & Anti-Sense: Small RNA-seq

Small RNA-seq data analysis designed for the biologist
ChIP-seq

Histone Mark & Transcription Factor: ChIP-seq

Comprehensive ChIP-seq data analysis
ATAC-seq

Chromatin Accessibility: ATAC-Seq

Genome-wide chromatin accessibility analysis
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Sharing & Collaboration

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Knowledge Graph and Search

Data organized for semantic queries
Knowledge Graph

COVID-19 Diagnostic Monitoring System

SARS-CoV-2 Viral Mutation Tracking
Single Cell

COVID Research Community

Global research analyzing COVID-19 genomic datasets

RNA-seq

Immuno Oncology

Making discoveries on IO research

NanoString

Breast Cancer

Identifying differentially expressed miRNAs in breast cancer

Small RNA-seq

HIV

Transcriptional and genomic profiling study of HIV+ DLBCL

ChIP-seq

Diabetes

Discover and accelerate T1D

ATAC-seq

Multi-Omics Dataset

Explore multi-omics datasets in epigenetics research

Single Cell Data

Single Cell Data

Explore datasets with our Cell Ranger graph-based clustering

nanoString Gene Expression

nanoString Gene Expression

Analyze your nCounter data in minutes

nanoString Mouse Glial Profiling Panel

nanoString Mouse Glial Profiling Panel

Explore neuroinflammatory astrocyte subtypes in the mouse brain

RNA-Seq Data

RNA-Seq Data

Get started with bulk RNA-Seq data

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ROSALIND Academy

ROSALIND Academy
nCounter Masterclass

ROSALIND Masterclass: NanoString nCounter Gene Expression
GeoMx Masterclass

ROSALIND Masterclass: NanoString GeoMx Spatial Transcriptomics
Gary Hardiman

Gary Hardiman

A native of Galway, Ireland, Gary joined the Medical University of South Carolina (MUSC) in 2014 to establish a university-wide bioinformatics program as Professor of Medicine in the Division of Nephrology and the Center for Genomic Medicine, Director of Bioinformatics. Mr. Hardiman has a broad background in genomics, genomics technologies, pharmacogenomics, molecular biology and bioinformatics. His research over the past 20 years in biotech and academic settings has employed functional and comparative genomics and systems biology approaches to uncover genetic targets in the context of inflammation, cancer, diabetes, cardiac disease, cystic fibrosis and HIV infection. A major research focus of his has been the development of diagnostics tools to study the effects of endocrine disruption in sentinel aquatic species. 

Recent posts by Gary Hardiman

2 min read

RNA-seq Webinar

By Gary Hardiman on Dec 7, 2017 8:48:50 PM

In this webinar, we discussed the transcriptomic analysis of racial disparities in prostate cancer using OnRamp's ROSALIND™ platform

Topics: Transcriptome BioInformatics Webinar RNAseq
4 min read

Prostate Cancer, Racial Disparities and Vitamin D3

By Gary Hardiman on Nov 16, 2016 10:18:00 AM

Transcriptome differences in prostate cancer highlight racial disparities. 

African-American and European-American men with prostate cancer exhibit significantly different expression of genes associated with immune response and inflammation.

Systems-level, RNA analyses support the concept that inflammatory processes may contribute to racial disparities in disease progression and that vitamin D3 supplementation can modulate pro-inflammatory transcripts.

Topics: Cancer BioInformatics Genomic Data Management
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